Ensembl S.cerevisiae

Karyotype

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About the S. cerevisiae genome

Assembly and Annotation

The data on this site is a direct import of the Saccharomyces Genome Database dataset for the Saccharomyces cerevisiae S288C genome. No additional genebuild was carried out, but a series of blast runs was done to provide ESTs, Swall hits, and other similarity data.

We have included S.cerevisiae into the Ensembl system to allow people to access the data through the Ensembl user interface (both for visualisation and data mining) and to provide cross-species integration through our comparative genomics resources (such as homologous gene links and protein family/domain pages).

The canonical data for S.cerevisiae is managed at SGD.

Image courtesy American Society for Microbiology

What's New in Ensembl 39

Saccharomyces cerevisiae News

There is no Saccharomyces cerevisiae-specific news this release.

General News

• Bug fixes
  In order to fix some problems with the store() method in Gene and Transcript, DBEntryAdaptor and AttributeAdaptor now require a gene/transcript/translation dbID rather than object as one of their arguments (please see POD for details).
• Multiple versions of genes
  The schema and API have been changed to allow multiple versions of genes, transcripts and exons, for better integration with Otter (the Ensembl-based database schema used as a backend for Havana).
  Read more...
• New MLAGAN groups
  A new 3-way MLAGAN Primate group has been created, containing Human, Chimp and macaque.
  Read more...
• Compara - whole genome alignments, syntenies and families
  

  Whome Genome Alignments.
  Read more...

• Gene Homology Trees
  

  Orthologues/paralogues are now based on gene trees, which has required a number of changes in the compara schema and API.

  3 new tables have been added.
  Read more...

More news...

Statistics

Assembly:	SGD 1, Nov 2005
Genebuild:	SGD, Nov 2005
Database version:	39.1d
Known genes:	6,680
Pseudogenes:	21
RNA genes:	397
Genscan gene predictions:	5,077
Genefinder gene predictions:	3,311
Gene exons:	7,026
Gene transcripts:	6,680
Base Pairs:	12,156,590
Golden Path Length:	12,156,590
Most common InterPro domains:	Top 40 Top 500